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5th Community Workshop: Integrating the Neuroscience Community

July 13 @ 12:00 - July 14 @ 17:00 CEST

 

Date: July 13, 12:00 -17:00 CEST
  July 14, 14:00 -17:00 CEST
Place: Online
  Connection details via mail

 

Focus will be on practical tools and applications for RDM. We will present selected use cases from and across different task areas. The workshop is open to everybody for participation and contribution. The second day will include contributions of community members in brief presentations (max 10 minutes).

Register for the workshop here!

Tentative agenda

16:50 – 17:00

Open discussion
Day 1: July 13, 12:00 – 17:00h CEST
12:00 – 12:05
Welcome

Petra Ritter (Spokesperson NFDI-Neuro, Charité Berlin)

12:05 – 12:20
Introduction Online Feedback

Alexandra Stein (Bernstein Coordination Site)
Stefan Rotter (University of Freiburg and Bernstein Center Freiburg)

12:20 – 13:20
Problems, processes and tools in neurophysiology, behavioral neuroscience and modeling

Hansjörg Scherberger (University of Göttingen and German Primate Center)
Dennis Segebarth (University Hospital of Würzburg)
Michael Denker (Forschungszentrum Jülich)
Andres Agudelo-Toro (German Primate Center)
Thomas Wachtler (LMU Munich and National Neuroinformatics Node – G-Node)

13:20 – 14:20
Provenance tracking with containerized pipelines for reproducible research

Michael Hanke (Forschungszentrum Jülich)
Michael Schirner (Charité Berlin)

14:20 – 14:30 Break
14:30 – 15:00
BIDS and extensions

Petra Ritter (Charité Berlin)
Julia Sprenger (Institut de Neurosciences de la Timone, Marseille)

15:00 – 15:30
FAIR data management of microscopy data using OMERO and the OME environment

Pavol Bauer (Leibniz Institute for Neurobiology, Magdeburg)

15:30 – 15:40 Break
15:40 – 16:10
Data management in national imaging cohort studies

Jan Klein (Fraunhofer MEVIS, Bremen)
Steffen Oeltze-Jafra (Peter L. Reichertz Institute for Medical Informatics at Hannover Medical School and Otto von Guericke University, Magdeburg)
Daniel Erkan (DZNE Bonn)

16:10 – 16:25
GDPR compliant RDM

Petra Ritter (Charité Berlin)

16:25 – 16:40
DICOM in Clinical Electrophysiology

Carsten Klingner (University Hospital Jena)

16:40 – 17:00
Discussion & Wrap-Up
Day 2: July 14, 14:00 – 17:00h CEST
14:00 – 14:05
Welcome

Petra Ritter (Spokesperson NFDI-Neuro, Charité Berlin)

14:05 – 14:15
A common data management strategy in a heterogenous research group

Christopher Wiesbrock (RWTH Aachen)

14:15 – 14:25
Using GIN-Tonic to structure and write research data

Julien Colomb (Humboldt Universität zu Berlin)

14:25 – 14:35
Distributed data repository for small animal MRI

Markus Aswendt (University Hospital Cologne)
Philipp Böhm-Sturm (Charité, Center for Stroke Research Berlin)

14:35 – 14:45
BIDS  extension proposal electrophysiology

Julian Neumann (Charité Berlin)

14:45 – 14:55
BIDS extension proposal computational modeling

Michael Schirner (Charité Berlin)

14:55 – 15:05
How to describe network model connectivity

Johanna Senk (Forschungszentrum Jülich)

15:05 – 15:15
Ontologies, terminologies, knowledge graphs & pathway inventories

Alpha Tom Kodamullil (Fraunhofer Institute for Algorithms and Scientific Computing SCAI)

15:15 – 15:30 Break
15:30 – 15:40
FAIR management of experimental and sample data with a connected electronic lab notebook

Rory Macneil (Research Space)

15:40 – 15:50
 EBRAINS Atlases

Timo Dickscheid (Forschungszentrum Jülich)

15:50 – 16:00
EBRAINS Knowledge Graph

Oliver Schmid (Knowledge Graph Product Owner and Senior Software Engineer)

16:00 – 16:10
openMINDS

Lyuba Zehl (Forschungszentrum Jülich)

16:10 – 16:20
Brief Status Update from Research Data Management at the Leibniz Rechenzentrum Munich

Stefan Hachinger (LRZ Munich)

16:20 – 16:30
Applications in precision medicine, drug discovery and systems medicine in NFDI4Health

Holger Fröhlich (Fraunhofer Institute for Algorithms and Scientific Computing SCAI)

16:30 – 16:40
RDM and computational processing for video tracking of behavior

Phillip Wieder (Gesellschaft für wissenschaftliche Datenverarbeitung Göttingen, GWDG)

16:40 – 16:50
Research Data Alliance und Max Planck Computing und Data Facility

Raphael Ritz (Max Planck Computing and Data Facility)

Details

Start:
July 13 @ 12:00 CEST
End:
July 14 @ 17:00 CEST
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