The 5th NFDI Neuroscience Community Workshop took place online on July 13-14, 2021. The subtitle of the workshop was „Integrating the Neuroscience Community”.
Representatives of the consortium presented selected use cases of the planned NFDI-Neuro consortium and introduced tools for research data management in various subdisciplines. These presentations were accompanied with a brief poll, on current usage of the presented tools and wishes or requirements of (future-) users of the respective tools.
While the poll was certainly not representative for the entire neuroscience community, it gives us a good impression on the user level of the audience attending the workshop. The open text question (see word cloud above) reveals the most pressing issues when it comes to implementing RDM tools: training, support, and standardization. Curated lists of tools, code examples and use cases were suggested to facilitate application of RDM tools and standards. The central pooling of such resources is one major goals of the NFDI Neuroscience initiative.
On the second day, community members contributed with presentations on current states of implementation, solutions and suggestions.
The presentations are being made available consectutively.
| Day 1: July 13, 12:00 – 17:00h CEST |
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Problems, processes and tools in neurophysiology, behavioral neuroscience and modelingHansjörg Scherberger (University of Göttingen and German Primate Center) |
Provenance tracking with containerized pipelines for reproducible researchMichael Hanke (Forschungszentrum Jülich) |
BIDS and extensionsPetra Ritter (Charité Berlin) |
FAIR data management of microscopy data using OMERO and the OME environment |
Data management in national imaging cohort studiesJan Klein (Fraunhofer MEVIS, Bremen) |
GDPR compliant RDM |
DICOM in Clinical Electrophysiology |
| Day 2: July 14, 14:00 – 17:00h CEST |
A common data management strategy in a heterogenous research group |
Using GIN-Tonic to structure and write research data |
Distributed data repository for small animal MRIMarkus Aswendt (University Hospital Cologne) and |
BIDS extension proposal electrophysiology |
BIDS extension proposal computational modeling |
How to describe network model connectivityJohanna Senk (Forschungszentrum Jülich) |
Ontologies, terminologies, knowledge graphs & pathway inventoriesAlpha Tom Kodamullil (Fraunhofer Institute for Algorithms and Scientific Computing SCAI) |
FAIR management of experimental and sample data with a connected electronic lab notebook |
EBRAINS Atlases |
EBRAINS Knowledge GraphOliver Schmid (Knowledge Graph Product Owner and Senior Software Engineer) |
openMINDS |
Brief Status Update from Research Data Management at the Leibniz Rechenzentrum Munich |
Applications in precision medicine, drug discovery and systems medicine in NFDI4HealthHolger Fröhlich (Fraunhofer Institute for Algorithms and Scientific Computing SCAI) |
RDM and computational processing for video tracking of behaviorPhillip Wieder (Gesellschaft für wissenschaftliche Datenverarbeitung Göttingen, GWDG) |
Research Data Alliance und Max Planck Computing und Data Facility |